PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488229
Common NameARALYDRAFT_488229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 154aa    MW: 17242.1 Da    PI: 7.1929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488229genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-053860123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C++ F ++  L  H++ H
   488229 38 FPCQYCPRKFYTSQALGGHQNAH 60
             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-63465No hitNo description
PROSITE profilePS5015711.0533865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAEPPPSYHH FVSPAKPRSS SKRHSFSSSS HPTSHRLFPC QYCPRKFYTS QALGGHQNAH  60
KRERAAARRN LGVLANSPPI LDDNTFLRPY PCFYQNPFQG STSGSEPVQE QTTMMTMGGY  120
DPFNPFPYVY PFGLSGNNDG NGVMEEDEPL DLDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052301e-176AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankAB4937471e-176AB493747.1 Arabidopsis thaliana At5g14010 mRNA for hypothetical protein, partial cds, clone: RAAt5g14010.
GenBankAY6126081e-176AY612608.1 Arabidopsis thaliana KNUCKLES (KNU) mRNA, complete cds.
GenBankBT0247031e-176BT024703.1 Arabidopsis thaliana At5g14010 mRNA, complete cds.
GenBankCP0026881e-176CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871596.11e-112hypothetical protein ARALYDRAFT_488229, partial
SwissprotQ9FFX44e-85KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLD7M5Z11e-112D7M5Z1_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__1363__AT5G14010.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-78C2H2 family protein